tax4fun-installation

帮助文档

http://tax4fun.gobics.de/RPackage/Readme_Tax4Fun.pdf

安装依赖

#进入终端模式
/YZGROUP/genewiz/public/app/r-3.4.1/bin/R

#安装依赖R包
install.packages("qiimer")
install.packages("Matrix")
install.packages("RJSONIO")
wget https://cran.r-project.org/src/contrib/Archive/biom/biom_0.3.12.tar.gz -P /tmp/
install.packages("/tmp/biom_0.3.12.tar.gz", repos=NULL, type="source")

install.packages("biom")安装会提示如下错误,经查官方已将其从安装源中移除!

详见https://cran.r-project.org/web/packages/biom/index.html

安装Tax4Fun

wget http://tax4fun.gobics.de/Tax4Fun/Tax4Fun_0.3.1.tar.gz -P /tmp/
install.packages("/tmp/Tax4Fun_0.3.1.tar.gz", repos = NULL, type = "source")