rtg-tool-installation

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 软件介绍

 https://github.com/RealTimeGenomics/rtg-tools

 安装依赖
  • java 1.8 or later [已安装]
  • graphviz [已安装]
  • apache ant 1.9 or later [待安装]

 安装apache ant

wget http://mirrors.tuna.tsinghua.edu.cn/apache//ant/binaries/apache-ant-1.9.11-bin.tar.gz
tar zxvf apache-ant-1.9.11-bin.tar.gz
mv apache-ant-1.9.11 /YZGROUP/genewiz/public/app/

 配置环境变量

export JAVA_HOME="/YZGROUP/genewiz/public/app/jdk18"
export JRE_HOME="/YZGROUP/genewiz/public/app/jdk18/jre"
export ANT_HOME="/YZGROUP/genewiz/public/app/apache-ant-1.9.11"
export PATH="$JAVA_HOME/bin:$JRE_HOME/bin:$ANT_HOME/bin:$PATH"
 安装rtg-tools
git clone https://github.com/RealTimeGenomics/rtg-tools.git
cd rtg-tools/
ant runalltests
ant zip-nojre
cd /YZGROUP/genewiz/public/download/rtg-tools/dist
unzip rtg-tools-3.9-eda9a71-nojre.zip
mv rtg-tools-3.9-eda9a71 /YZGROUP/genewiz/public/app/rtg-tools-3.9
cd /YZGROUP/genewiz/public/app/rtg-tools-3.9
./scripts/demo-tools.sh $PWD/rtg #生成demo数据
 配置rtg PATH
export PATH="/YZGROUP/genewiz/public/app/rtg-tools-3.9:$PATH"
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